Koenig 2013 PNAS Data

Data files for Koenig, et al.'s 2013 PNAS paper, "Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato".

Number of Files: 7

Tags:

Novel de novo Tomato Contigs Novel de novo Tomato Contigs [ novel_de_novo_contigs.fa, 35.5 KB ]

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S. Lycopersicum Matched CDS (ITAG2.3) S. Lycopersicum Matched CDS (ITAG2.3) [ Slyc_Matched_CDS_ITAG2.3.fa, 31.3 MB ]

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S. Lycopersicum Upstream Sequences S. Lycopersicum Upstream Sequences [ Slyc_Upstream1000.fa, 34.5 MB ]

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S. Pennellii Matched CDS (ITAG2.3) S. Pennellii Matched CDS (ITAG2.3) [ Spen_Matched_CDS_ITAG2.3.fa, 32.0 MB ]

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S. Pennellii Upstream Sequences for IL43 S. Pennellii Upstream Sequences for IL43 [ Spen_Upstream1000_IL43.fa, 733.8 KB ]

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Tomato Polymorphisms (Koenig 2013 PNAS) Tomato Polymorphisms (Koenig 2013 PNAS) [ Dataset_S1.Polymorphisms.zip, 36.0 MB ]
SNPs and INDELs for six tomato species. These polymorphisms were identified in Koenig, et al.'s 2013 PNAS paper. Detailed information about the contents of this compressed file are contained within the included 'readme.txt'.

This file contains four tables:

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Tomato-Potato Alignments Tomato-Potato Alignments [ tomato_potato_alignments.tar.gz, 6.7 MB ]

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